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Thread: plotting the effect of treatment on plants

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    Question plotting the effect of treatment on plants




    Hello,

    I have some plant data, which contains several plant groups. Within the plant groups there are different plant sizes (devided in groups). For each plant I noted whether it was infected before and after the treatment:

    data = data.plant

    > str(data.plant)

    $ Group.nr: Factor w/15 levels : "1" , "2" , "3" , "4".....
    $ Plant.nr: Factor w/30 levels :"1" , "2" , "3" , "4".....
    $ Size: Factor w/4 levels : "150", "200" , "250", "300"...
    $ Status: Factor w/2 levels: "Before" "After"
    $ Infection: Factor w/2 levels: "Infected" , "Not.Infected"...

    (See attachment as well)

    Now... I get lost in the structure. Because I am not sure how I have to structure my data in R to get the following data:

    How much % within each plant size was infected before and got better again. Also the % within each plant size that was infected and is still infected after the treatment is interesting...

    I'm also trying to create a graph like in the attachment/example here but I can't seem to make the right grouping... could someone help me...?? Thank you so much!
    Attached Thumbnails Attached Thumbnails Click image for larger version

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Name:	Graph example.jpg‎
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ID:	6749  

  2. #2
    ggplot2orBust
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    Re: plotting the effect of treatment on plants


    You likely haven't gotten a response because this is not reproducible (there is not data to work with). Use sample and rnorm functions to make up data similar to your data.plant
    "If you torture the data long enough it will eventually confess."
    -Ronald Harry Coase -

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