I am trying to permute data and return a maxT p value to adjust for FWER.
I have an example of data:
SNP1 p value= 0.02
SNP1 permutation p values = 0.03, 0.03, 0.03, 0.04, 0.04.
SNP2 p value =0.03
SNP2 permutation p values = 0.4,0.5,0.5,0.6,0.7
SNP3 p value = 0.3