[HAPSTAT] how to interpret results


New Member
HELP!!!!!!!!!!!!!!!!!!!!!!!!! :shakehead:shakehead:shakehead

I can't figure out how to interpret results of HAPSTAT. So I made the imput file with my data and opened it with HAPSTAT. I followed the manual instructions to calculate a very simple haplotype main effect on disease, and haplotype x environment interaction.
Results come with a p-value which is easy to understand.... BUT

I have to test a specific haplotype, in the imput file I made, SNPs had to be coded as 0, 1 and 2, according to the number of alleles (disease allele or minor allele) present. Results are given with haplotypes coded as 1 and 0. I mean, all my haplotypes look like 1001 0101 1010 1100 0110 (mine is a 4 SNPs haplotype) and I have NO CLUE how to decode them to get to the one I wanted to test!!

I am sorry if this is a silly question!!! But I am desperate!!! :shakehead


Thank you :yup: